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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. CHMP1B, charged multivesicular body protein 1B
Sequence ID:NM_020412
Entrez Gene ID:57132
Ensembl ID:ENSG00000255112

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cartilage, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, skin, soft tissue, stem cell, stomach, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:18p11.21Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:18: 11851466 - 11852527

NM_020412 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
130591185138811854446

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3928338Full LengthBC012733chromatin modifying protein 1B
6165059Full LengthBC065933chromatin modifying protein 1B

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_065145  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_020412 NP_065145 Q7LBR1 ESCRT-III

Related Sequences

 
mRNAGenPeptSwissProt
AF281064 AAG01449 Q7LBR1
BC012733 AAH12733 Q7LBR1
BC065933 AAH65933 Q7LBR1
HQ448716 ADQ33194  
AK314068 BAG36769 B2RA72

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens CHMP1B NP_065145 R.norvegicus Chmp1b 689364   NP_001103003 99
M.musculus Chmp1b 67064 Gene Info NP_077152 98
A.thaliana VPS46.2 843634   NP_565053 48
A.thaliana VPS46.1 838349   NP_173215 47

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)