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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. C12orf10, chromosome 12 open reading frame 10
Sequence ID:NM_021640
Entrez Gene ID:60314
Ensembl ID:ENSG00000139637

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, placenta, pooled tissue, prostate, retina, salivary gland, skin, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:12q13Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:12: 53696844 - 53700955

NM_021640 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
12685369346953693736
2693815369393353694045
3825415369681753696976
5426945369969153699843
6958175369998153700103
8189995370046353700644
100012145370074953700963

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4454943Full LengthBC028904chromosome 12 open reading frame 10
5170816Full LengthBC051871chromosome 12 open reading frame 10
3507558IncompleteBC013956chromosome 12 open reading frame 10

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_067653  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_021640 NP_067653 Q86UA3 UPF0160

Related Sequences

 
mRNAGenPeptSwissProt
AF289485 AAG17847 Q9HB07
BC013956 AAH13956 Q96CT6
BC028904 AAH28904 Q8WYI2
BC051871 AAH51871 Q86UA3
AF111805 AAL39007 Q8WYI2
HQ448593 ADQ33071  
JF432600 ADZ15817  
AK293449 BAG56948 B4DE37

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens C12orf10 NP_067653 R.norvegicus Myg1 300258   NP_001005545 88
M.musculus Myg1 60315 Gene Info NP_068359 88
N.crassa NCU03859 3871999   XP_955852 51
A.thaliana AT5G41970 834202   NP_199012 50
S.pombe SPAC694.04c 2543308   NP_594484 50
C.elegans C27H6.8 179392   NP_741610 49
A.gambiae AgaP_AGAP002408 1273554   XP_312544 49
S.cerevisiae YER156C 856900   NP_011083 46
D.melanogaster CG11980 41078   NP_731302 45

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)