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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. GPC5, glypican 5
Sequence ID:NM_004466
RefSeqGene ID:NG_009370
Entrez Gene ID:2262
Ensembl ID:ENSG00000179399

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:13q32Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:13: 92051219 - 93518831

NM_004466 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
15299205093492051462
5306919210101492101175
69213869234544092346134
138715209238078592380918
152116469240854892408673
164717679256019092560310
176819279279708292797241
192828789351853493519484

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
5744533Full LengthBC039730glypican 5

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_004457  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_004466 NP_004457 P78333 Glypican

Related Sequences

 
mRNAGenPeptSwissProt
AF001462 AAC12261 P78333
U66033 AAC51118 P78333
BC039730 AAH39730 P78333
JF432362 ADZ15579  
AK312815 BAG35673 P78333

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens GPC5 NP_004457 M.musculus Gpc5 103978 Gene Info NP_780709 86
R.norvegicus Gpc5 306157   NP_001100755 85
D.melanogaster dally 39013   NP_523983 32
A.gambiae AgaP_AGAP005799 1276466   XP_315813 29

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)