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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Hs. PCDH11X, protocadherin 11 X-linked
Sequence ID:NM_001168360
NM_001168361
NM_001168362
NM_001168363
NM_014522
NM_032967
NM_032968
NM_032969
RefSeqGene ID:NG_016251
Entrez Gene ID:27328
Ensembl ID:ENSG00000102290

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:Xq21.3Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:X: 91089658 - 91134997

 Exon Info From UCSC:
NM_001168360
NM_001168361
NM_001168362
NM_001168363
NM_014522
NM_032967
NM_032968
NM_032969

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
100068207Full LengthBC167817protocadherin 11 X-linked

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_116751  NP_055337  NP_116750  NP_116749  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001168360 NP_001161832    
NM_001168361 NP_001161833    
NM_001168362 NP_001161834    
NM_001168363 NP_001161835    
NM_014522 NP_055337   Cadherin
Cadherin_2
Protocadherin
NM_032967 NP_116749   Cadherin
Cadherin_2
Protocadherin
NM_032968 NP_116750 Q9BZA7 Cadherin
Cadherin_2
Protocadherin
NM_032969 NP_116751   Cadherin
Cadherin_2
Protocadherin

Related Sequences

 
mRNAGenPeptSwissProt
BC167817 AAI67817  
AF332218 AAK13470 Q9BZA7
AF332219 AAK13471 Q9BZA7
AF206516 AAK82655 Q9BZA7
AF217288 AAK82656 Q9BZA7
AY861432 AAX56122 Q9BZA7
AY861433 AAX56123 Q9BZA7
AY861434 AAX56124 Q9BZA7
AY861435 AAX56125 Q9BZA7
AB026187 BAA90765 Q9BZA7
AB026188 BAA90766 Q9P2X4
AB037747 BAA92564 Q9BZA7
AK299813 BAG61685 B4DSM3
AK316263 BAH14634 B7ZAE8
AJ276804 CAC13123 Q9BZA7
AJ564931 CAD92410 Q9BZA7
AJ564932 CAD92411 Q9BZA7
AJ564933 CAD92412 Q9BZA7
AJ564934 CAD92413 Q9BZA7
AJ564935 CAD92414 Q9BZA7
AJ564936 CAD92415 Q9BZA7
AJ564937 CAD92416 Q70LT6
AJ564938 CAD92417 Q70LT5
AJ564939 CAD92418 Q70LT4
AJ564942 CAD92421 Q9BZA7
AJ564943 CAD92422 Q70LR7
AJ564945 CAD92424 Q9BZA7
AJ564946 CAD92425 Q9BZA7
AJ564947 CAD92426 Q9BZA7
AJ564959 CAD92430 Q9BZA8

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens PCDH11X NP_116750 H.sapiens PCDH11Y 83259 Gene Info NP_116755 98
R.norvegicus Pcdh11x 317204   XP_228479 83
M.musculus Pcdh11x 245578 Gene Info NP_001074854 82

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)