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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. ARID3B, AT rich interactive domain 3B (BRIGHT-like)
Sequence ID:NM_006465
Entrez Gene ID:10620
Ensembl ID:ENSG00000179361

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:15q24Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:15: 74833598 - 74890470

NM_006465 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
11247483354774833670
1257537483620074836828
7548257486520274865273
8268987486547274865544
89910827488216074882343
108313667488349174883774
136716217488390074884154
162217207488547874885576
172142397488795174890469

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
5297774Full LengthBC041792AT rich interactive domain 3B (BRIGHT-like)
4838802IncompleteBC045545AT rich interactive domain 3B (BRIGHT- like)
30343734IncompleteBC060824AT rich interactive domain 3B (BRIGHT-like)

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_006456  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_006465 NP_006456   ARID

Related Sequences

 
mRNAGenPeptSwissProt
AF116846 AAD09133 Q8IVW6
BC041792 AAH41792 Q8IVW6
AB208830 BAD92067 Q8IVW6
AK298716 BAG60872 B4DQB0
AK302034 BAG63430 B4DXL8

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens ARID3B NP_006456 R.norvegicus Arid3b 367092   NP_001102471 89
M.musculus Arid3b 56380 Gene Info NP_062663 88

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)