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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. TRPV1, transient receptor potential cation channel, subfamily V, member 1
Sequence ID:NM_018727
NM_080704
NM_080705
NM_080706
RefSeqGene ID:NG_029716
Entrez Gene ID:7442
Ensembl ID:ENSG00000196689

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:17p13.2Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:17: 3468739 - 3500392

 Exon Info From UCSC:
NM_018727
NM_080704
NM_080705
NM_080706

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
9020623Full LengthBC136633transient receptor potential cation channel, subfamily V, member 1
40146842Full LengthBC132820transient receptor potential cation channel, subfamily V, member 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_542437  NP_061197  NP_542435  NP_542436  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_018727 NP_061197   Ank
Ion_trans
NM_080704 NP_542435 Q8NER1 Ank
Ion_trans
NM_080705 NP_542436   Ank
Ion_trans
NM_080706 NP_542437   Ank
Ion_trans

Related Sequences

 
mRNAGenPeptSwissProt
AF196175 AAG43466 Q8NER1
AF196176 AAG43467 Q8NER1
BC132820 AAI32821 Q8NER1
BC136633 AAI36634 Q8NER1
AY131289 AAM89472 Q8NER1
AF235160 AAN73432 Q8IZY9
AY986821 AAX84657 Q52PU4
DQ177332 ABA06605 Q3LU47
DQ177333 ABA06606 Q3LU46
DQ898279 ABI58280 Q09HS5
AL136801 CAB66735 Q8NER1
AJ272063 CAB89866 Q8NER1
AJ277028 CAB95729 Q8NER1
AM393687 CAL38563  

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens TRPV1 NP_542435 M.musculus Trpv1 193034 Gene Info NP_001001445 87
R.norvegicus Trpv1 83810   NP_114188 86

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)