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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. RHOT1, ras homolog family member T1
Sequence ID:NM_001033567
NM_001033566
NM_001033568
NM_018307
Entrez Gene ID:55288
Ensembl ID:ENSG00000126858

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, colon, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pineal gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, spleen, stem cell, stomach, testis, thymus, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:17q11.2Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:17: 30469484 - 30552746

 Exon Info From UCSC:
NM_001033566
NM_001033568
NM_018307

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4823115Full LengthBC060781ras homolog gene family, member T1
40118340Full LengthBC125104ras homolog gene family, member T1
40118341Full LengthBC125105ras homolog gene family, member T1
3906539IncompleteBC015698ras homolog gene family, member T1
4154350IncompleteBC041114ras homolog gene family, member T1
4839305IncompleteBC068463ras homolog gene family, member T1
6009328IncompleteBC051818ras homolog gene family, member T1
100002457BC146694ras homolog gene family, member T1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_060777  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001033566 NP_001028738    
NM_001033568 NP_001028740    
NM_018307 NP_060777 Q8IXI2 efhand
EF_assoc_1
EF_assoc_2
Miro

Related Sequences

 
mRNAGenPeptSwissProt
BC015698 AAH15698 Q8IXI2
BC041114 AAH41114 Q8IXI2
BC051818 AAH51818 Q8IXI2
BC060781 AAH60781 Q8IXI2
BC068463 AAH68463 Q8IXI2
BC125104 AAI25105 Q8IXI2
BC125105 AAI25106 Q8IXI2
BC146694 AAI46695  
AY094972 AAM15734 Q8IXI2
AK001902 BAA91969 Q8IXI2
AK022695 BAB14185 Q8IXI2
AK294407 BAG57659 Q8IXI2
AL136929 CAB66863 Q8IXI2
AJ496730 CAD43139 Q8IXI2
AJ517412 CAD56956 Q8IXI2
AM393207 CAL38085  

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens RHOT1 NP_060777 M.musculus Rhot1 59040 Gene Info NP_067511 98
R.norvegicus Rhot1 303351   NP_001100496 98
A.gambiae AgaP_AGAP007998 1277953   XP_317471 55
D.melanogaster Miro 42845   NP_732936 54
C.elegans C47C12.4 183540   NP_509310 48
C.elegans K08F11.5 177238   NP_500620 45
C.elegans Y47G6A.27 189998   NP_491179 43
A.thaliana MIRO2 825490   NP_567139 41

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)