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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. ABCF1, ATP-binding cassette, sub-family F (GCN20), member 1
Sequence ID:NM_001025091
NM_001090
Entrez Gene ID:23
Ensembl ID:ENSG00000204574

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, colon, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, placenta, pooled tissue, prostate, salivary gland, skin, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:6p21.33Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:6: 30550259 - 30564956

 Exon Info From UCSC:
NM_001025091
NM_001090

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4826422Full LengthBC034488ATP-binding cassette, sub-family F (GCN20), member 1
7470309Full LengthBC112923ATP-binding cassette, sub-family F (GCN20), member 1
4092495IncompleteBC016772ATP-binding cassette, sub-family F (GCN20), member 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_001020262  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001025091 NP_001020262 Q8NE71 ABC_tran
NM_001090 NP_001081    

Related Sequences

 
mRNAGenPeptSwissProt
AF027302 AAC70891 Q8NE71
BC016772 AAH16772 A0PJ72
BC034488 AAH34488 Q8NE71
BC112923 AAI12924 Q8NE71
DQ891255 ABM82181  
DQ894817 ABM85743  
AB209564 BAD92801 Q59F96
AK298061 BAG60354 B4DNU2
AL832430 CAH10648 Q8NE71

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens ABCF1 NP_001020262 R.norvegicus Abcf1 85493   NP_001103353 93
M.musculus Abcf1 224742 Gene Info NP_038882 92
C.elegans abcf-1 179748   NP_506192 61
A.gambiae AgaP_AGAP012249 1280440   XP_320293 57
D.melanogaster CG1703 32112   NP_572736 55
A.thaliana GCN4 824619   NP_567001 48
S.pombe SPCC825.01 2539509   NP_588051 38

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)