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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. RFX1, Regulatory factor X, 1 (influences HLA class II expression)
Sequence ID:NM_002918
Entrez Gene ID:5989
Ensembl ID:ENSG00000132005

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:19p13.1Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:19: 14080451 - 14117134

 Exon Info From UCSC:
NM_002918

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
6043247Full LengthBC049826regulatory factor X, 1 (influences HLA class II expression)

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_002909  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_002918 NP_002909 P22670 RFX_DNA_binding
RFX1_trans_act

Related Sequences

 
mRNAGenPeptSwissProt
BC049826 AAH49826 P22670
A20498 CAA01506 P22670
X58964 CAA41730 P22670

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens RFX1 NP_002909 R.norvegicus Rfx1 288906   NP_001099414 94
M.musculus Rfx1 19724 Gene Info NP_033081 93

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)