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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. SPSB4, SplA/ryanodine receptor domain and SOCS box containing 4
Sequence ID:NM_080862
Entrez Gene ID:92369
Ensembl ID:ENSG00000175093

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:3q23Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:3: 140866762 - 140867451

NM_080862 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
10101140770742140770833
102948140784793140785639
9492417140865983140867451

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3501702Full LengthBC008324splA/ryanodine receptor domain and SOCS box containing 4

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_543138  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_080862 NP_543138 Q96A44 SPRY
SOCS_box

Related Sequences

 
mRNAGenPeptSwissProt
BC008324 AAH08324 Q96A44
AF403029 AAL57348 Q96A44
JF432868 ADZ16085  
AK056367 BAB71165 Q96A44

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens SPSB4 NP_543138 M.musculus Spsb4 211949 Gene Info NP_660116 98
R.norvegicus Spsb4 300950   NP_001100319 98
D.melanogaster gus 35478   NP_724400 69
A.gambiae AgaP_AGAP010197 1279618   XP_319376 68
C.elegans Y46E12BL.4 266876   NP_497321 59
C.elegans Y46E12BL.3 266877   NP_497320 50

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)