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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Hs. ATP6AP1, ATPase, H+ transporting, lysosomal accessory protein 1
Sequence ID:NM_001183
Entrez Gene ID:537
Ensembl ID:ENSG00000071553

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:Xq28Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:X: 153660629 - 153664859

NM_001183 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
1222153656977153657198
223349153657393153657519
350424153660175153660249
425618153660611153660804
619659153661276153661316
660745153661980153662065
746984153662553153662791
9851032153663484153663531
10331264153663619153663850
12652099153664027153664861

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3506925Full LengthBC000724ATPase, H+ transporting, lysosomal accessory protein 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_001174  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001183 NP_001174 Q15904 ATP-synt_S1

Related Sequences

 
mRNAGenPeptSwissProt
BC000724 AAH00724 Q15904
DQ892139 ABM83065  
DQ895333 ABM86259  
D16469 BAA03938 Q15904
AK090462 BAC03443 Q8NF19
AK075284 BAC11520 Q8NBT4
AK289452 BAF82141 Q15904
AK091083 BAG52282 B3KR70
AK301603 BAG63090 B4DWM8
AL136851 CAB66785 Q9H0C7
AM392567 CAL37445  
AM393312 CAL38190 Q15904
AM393872 CAL38747  

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens ATP6AP1 NP_001174 R.norvegicus Atp6ap1 83615   NP_113973 89
M.musculus Atp6ap1 54411 Gene Info NP_061264 87

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)