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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. TNRC6A, Trinucleotide repeat containing 6A
Sequence ID:NM_014494
Entrez Gene ID:27327
Ensembl ID:ENSG00000090905

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, retina, skin, soft tissue, spleen, stem cell, stomach, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:16p11.2Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:16: 24801654 - 24836196

 Exon Info From UCSC:
NM_014494

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
100069103Full LengthBC172409trinucleotide repeat containing 6A
4427559IncompleteBC024324trinucleotide repeat containing 6A
6197151IncompleteBC068209trinucleotide repeat containing 6A

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_014494 NP_055309 Q8NDV7  

Related Sequences

 
mRNAGenPeptSwissProt
U80739 AAB91438 Q8NDV7
BC024324 AAH24324 Q8NDV7
BC172409 AAI72409 Q8NDV7
AY035864 AAK62026 Q8NDV7
AK001773 BAA91899 Q8NDV7
AB040893 BAA95984 Q8NDV7
AK094542 BAG52884 B3KSX2
AK299905 BAG61746 B4DST4
AL713750 CAD28525 Q8NDV7
AJ492221 CAD37348 Q8NDV7
AL833757 CAH56236 Q8NDV7

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens TNRC6A NP_055309 M.musculus Tnrc6a 233833 Gene Info NP_659174 95
R.norvegicus Tnrc6a 308971   NP_001101019 95

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)