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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. CHCHD3, Coiled-coil-helix-coiled-coil-helix domain containing 3
Sequence ID:NM_017812
Entrez Gene ID:54927
Ensembl ID:ENSG00000106554

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, placenta, pooled tissue, prostate, retina, salivary gland, skin, stem cell, stomach, synovium, t-cell, testis, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:7q33Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:7: 132469622 - 132766828

NM_017812 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
29826132469623132470420
827962132481202132481337
9631033132523158132523228
10341117132570421132570504
11181235132659928132660045
12361317132709305132709386
13181405132754901132754988
14061617132766616132766827

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
2901125Full LengthBC014839coiled-coil-helix-coiled-coil-helix domain containing 3
3346346Full LengthBC011596coiled-coil-helix-coiled-coil-helix domain containing 3

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_060282  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_017812 NP_060282 Q9NX63 DUF737
CHCH

Related Sequences

 
mRNAGenPeptSwissProt
BC011596 AAH11596 Q9NX63
BC014839 AAH14839 Q9NX63
HQ447383 ADQ31869  
AK000427 BAA91157 Q9NX63
AK294071 BAH11665 B7Z1X9

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens CHCHD3 NP_060282 M.musculus Chchd3 66075 Gene Info NP_079612 90
R.norvegicus Chchd3 296966   NP_001100058 86

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)