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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. POLR2J, polymerase (RNA) II (DNA directed) polypeptide J, 13.3kDa
Sequence ID:NM_006234
Entrez Gene ID:5439
Ensembl ID:ENSG00000005075

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:7q22.1Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:7: 102113953 - 102119378

NM_006234 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
16599102113547102114130
600774102114807102114981
775864102116627102116716
865991102119254102119380

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4069069Full LengthBC024165polymerase (RNA) II (DNA directed) polypeptide J, 13.3kDa
4133200Full LengthBC065711polymerase (RNA) II (DNA directed) polypeptide J, 13.3kDa
40147225Full LengthBC139902polymerase (RNA) II (DNA directed) polypeptide J, 13.3kDa
40148671Full LengthBC141830polymerase (RNA) II (DNA directed) polypeptide J, 13.3kDa
6016709IncompleteBC040116polymerase (RNA) II (DNA directed) polypeptide J, 13.3kDa

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_006225  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_006234 NP_006225 P52435 RNA_pol_L

Related Sequences

 
mRNAGenPeptSwissProt
L37127 AAD05361 P52435
BC024165 AAH24165 P52435
BC065711 AAH65711 P52435
BC139902 AAI39903 P52435
BC141830 AAI41831 P52435
DQ893151 ABM84077  
DQ896446 ABM87445  
AK290515 BAF83204 P52435
X82385 CAA57785 P52435
X98433 CAA67075 P52435

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens POLR2J NP_006225 M.musculus Polr2j 20022 Gene Info NP_035423 100
R.norvegicus Polr2j 288588   NP_001099391 100
D.melanogaster Rpb11 35043   NP_609836 78
A.gambiae RPB11_ANOGA 1280168   XP_319985 75
C.elegans rpb-11 175056   NP_496942 71
A.thaliana NRPB11 824372   NP_190777 50

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)