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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. P4HTM, prolyl 4-hydroxylase, transmembrane (endoplasmic reticulum)
Sequence ID:NM_177938
NM_177939
NM_017732
Entrez Gene ID:54681
Ensembl ID:ENSG00000178467

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, retina, skin, spleen, stem cell, stomach, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:3p21.31|3p21.3Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:3: 49038505 - 49040409

 Exon Info From UCSC:
NM_177938
NM_177939

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3940241Full LengthBC011710prolyl 4-hydroxylase, transmembrane (endoplasmic reticulum)
5259068Full LengthBC047566prolyl 4-hydroxylase, transmembrane (endoplasmic reticulum)
3162218IncompleteBC000580prolyl 4-hydroxylase, transmembrane (endoplasmic reticulum)
4395118IncompleteBC060321prolyl 4-hydroxylase, transmembrane (endoplasmic reticulum)

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_808808  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_177938 NP_808807    
NM_177939 NP_808808 Q9NXG6 2OG-FeII_Oxy

Related Sequences

 
mRNAGenPeptSwissProt
BC000580 AAH00580 Q9NXG6
BC011710 AAH11710 Q9NXG6
BC047566 AAH47566 Q9NXG6
BC060321 AAH60321 Q9NXG6
AY198406 AAO43431 Q9NXG6
AK000269 BAA91045 Q9NXG6
AL713728 CAD28518 Q9NXG6

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens P4HTM NP_808808 M.musculus P4htm 74443 Gene Info NP_083220 91
R.norvegicus P4htm 301008   XP_217285 91

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)