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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. RARS, arginyl-tRNA synthetase
Sequence ID:NM_002887
Entrez Gene ID:5917
Ensembl ID:ENSG00000113643

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:5q35.1Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:5: 167913486 - 167946309

 Exon Info From UCSC:
NM_002887

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
2961565Full LengthBC000528arginyl-tRNA synthetase
2961565Full LengthBC014619arginyl-tRNA synthetase

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_002878  

Protein Infomation

RefSeq
mRNAProteinSwissProtEnzymePfam
NM_002887 NP_002878 P54136 EC 6.1.1.19 tRNA-synt_1d
Arg_tRNA_synt_N
tRNA-synt_1d_C

Related Sequences

 
mRNAGenPeptSwissProtEnzyme
S80343 AAB35627 P54136 EC 6.1.1.19
BC000528 AAH00528 P54136 EC 6.1.1.19
BC014619 AAH14619 P54136 EC 6.1.1.19
BT007394 AAP36058 P54136 EC 6.1.1.19
AK222797 BAD96517 P54136 EC 6.1.1.19
AK314795 BAG37326 P54136 EC 6.1.1.19
AK302161 BAG63528 B4DXW6  

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens RARS NP_002878 M.musculus Rars 104458 Gene Info NP_080212 92
R.norvegicus Rars 287191   NP_001099247 92
D.melanogaster Aats-arg 32539   NP_573081 59
A.gambiae AgaP_AGAP004708 1278518   XP_318119 57
C.elegans rrt-1 175659   NP_001022551 54
A.thaliana AT1G66530 842971   NP_176826 49
A.thaliana emb1027 828736   NP_194360 49
P.falciparum PFL0900c 811232   XP_001350588 39

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)