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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.

Gene Info

Gene Information For:Hs. CHKB, choline kinase beta
Sequence ID:NM_005198
RefSeqGene ID:NG_029213
Entrez Gene ID:1120
Ensembl ID:ENSG00000100288

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, salivary gland, skin, spleen, stem cell, synovium, t-cell, testis, thymus, uncharacterized tissue, uterus
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:22q13.33Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:22: 51017392 - 51021278

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
6384695Full LengthBC082263choline kinase beta
8068994Full LengthBC101488choline kinase beta
8322573Full LengthBC113521choline kinase beta
4762199IncompleteBC037162choline kinase beta

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_005189  

Protein Infomation

NM_005198 NP_005189 Q9Y259 EC

Related Sequences

BC082263 AAH82263 Q9Y259 EC
BC101488 AAI01489 Q9Y259 EC
BC113521 AAI13522 Q9Y259 EC
HQ258226 ADR82980    
AB029886 BAA82512 Q9Y259 EC
AK314324 BAG36972 Q9Y259 EC
AL096780 CAB46629 Q9Y259 EC
AL096781 CAB46630 Q9Y259 EC
CR456419 CAG30305 Q9Y259 EC
CU012980 CAK54411    
CU013268 CAK54710    

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene Info Protein
H.sapiens CHKB NP_005189 M.musculus Chkb 12651 Gene Info NP_031718 86
R.norvegicus Chkb 29367   NP_058873 86
A.gambiae AgaP_AGAP007957 1277995   XP_317515 48
C.elegans cka-2 180703   NP_001024480 46
D.melanogaster CG2201 35417   NP_724349 42
A.thaliana CK1 843500   NP_177315 37
A.thaliana AT4G09760 826564   NP_192714 36

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)