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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. SGMS1, Sphingomyelin synthase 1
Sequence ID:NM_147156
Entrez Gene ID:259230
Ensembl ID:ENSG00000198964

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:10q11.2Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:10: 52066531 - 52220457

 Exon Info From UCSC:
NM_147156

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4342258Full LengthBC042899sphingomyelin synthase 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_671512  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_147156 NP_671512   SAM_1

Related Sequences

 
mRNAGenPeptSwissProtEnzyme
BC042899 AAH42899 Q86VZ5 EC 2.7.8.27
AY280959 AAP37279 Q86VZ5 EC 2.7.8.27
AY332650 AAQ22363 Q86VZ5 EC 2.7.8.27
AY312431 AAQ82051 Q86VZ5 EC 2.7.8.27
AY364088 AAR13294 Q86VZ5 EC 2.7.8.27
AB154421 BAD16809 Q86VZ5 EC 2.7.8.27
AK296233 BAG58954 B4DJU2  
BN000143 CAD79708 Q86VZ5 EC 2.7.8.27
FM210200 CAR65042 C0MHM2  
FN870365 CBM41470 C0MHM2  
FN908045 CBM42040 E6ZCI6  
FN908146 CBM43071 E6ZCI7  
FR686760 CBW52777    

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens SGMS1 NP_671512 M.musculus Sgms1 208449 Gene Info NP_001161997 98
R.norvegicus Sgms1 353229   NP_852051 97
A.gambiae AgaP_AGAP008926 1279896   XP_319678 48
C.elegans sms-1 178072   NP_502169 38

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)