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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Hs. GALNT2, UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 2 (GalNAc-T2)
Sequence ID:NM_004481
RefSeqGene ID:NG_011854
Entrez Gene ID:2590
Ensembl ID:ENSG00000143641

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, placenta, pooled tissue, prostate, retina, skin, spleen, stem cell, stomach, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:1q41-q42Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:1: 230416151 - 230417868

 Exon Info From UCSC:
NM_004481

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
5553465Full LengthBC041120UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 2 (GalNAc-T2)
6068693IncompleteBC050583UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 2 (GalNAc-T2)

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_004472  

Protein Infomation

RefSeq
mRNAProteinSwissProtEnzymePfam
NM_004481 NP_004472 Q10471 EC 2.4.1.41 Glycos_transf_2
Ricin_B_lectin

Related Sequences

 
mRNAGenPeptSwissProtEnzyme
BC041120 AAH41120 Q10471 EC 2.4.1.41
AK290048 BAF82737 Q10471 EC 2.4.1.41
AK296886 BAH12448 B7Z462  
AK300453 BAH13288 B7Z6K2  
AK304029 BAH14094 B7Z8V8  
X85019 CAA59381 Q10471 EC 2.4.1.41

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens GALNT2 NP_004472 R.norvegicus Galnt2 292090   NP_001099666 98
M.musculus Galnt2 108148 Gene Info NP_644678 96
D.melanogaster pgant2 33556   NP_608773 67
A.gambiae AgaP_AGAP010078 1279509   XP_319236 63
C.elegans gly-4 180302   NP_001024216 56

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)