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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. EXOSC2, exosome component 2
Sequence ID:NM_014285
Entrez Gene ID:23404
Ensembl ID:ENSG00000130713

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, placenta, pooled tissue, prostate, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:9q34Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:9: 133569157 - 133580136

NM_014285 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
1143133569157133569299
144245133570878133570979
246291133572968133573013
292381133573548133573637
382447133574715133574780
448516133576253133576321
517693133577520133577696
694822133578439133578567
8232194133579080133580451

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
2821702Full LengthBC000747exosome component 2
40121885IncompleteBC128445exosome component 2

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_014285 NP_055100 Q13868  

Related Sequences

 
mRNAGenPeptSwissProt
BC000747 AAH00747 Q13868
BC128445 AAI28446 A2VCR1
DQ892753 ABM83679  
EU176744 ABW03545  
AK001916 BAA91977 Q13868
AK022460 BAB14043 Q13868
AK090512 BAG52174 B3KQW2
AK296605 BAG59218 B4DKK6
AK303163 BAG64263 B4E001

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens EXOSC2 NP_055100 R.norvegicus Exosc2 366017   NP_001102422 95
M.musculus Exosc2 227715 Gene Info NP_659135 94
A.gambiae AgaP_AGAP011211 1270713   XP_309432 64
D.melanogaster Rrp4 37731   NP_611807 60
A.thaliana RRP4 839521   NP_171835 51
S.pombe SPAC2F7.14c 2541813   NP_592984 49
N.crassa NCU04009 3873811   XP_957624 49
S.cerevisiae RRP4 856466   NP_011936 47
C.elegans exos-2 177403   NP_500978 42

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)