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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. CASP6, caspase 6, apoptosis-related cysteine peptidase
Sequence ID:NM_001226
NM_032992
RefSeqGene ID:NG_029187
Entrez Gene ID:839
Ensembl ID:ENSG00000138794

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:4q25Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:4: 110610036 - 110624577

 Exon Info From UCSC:
NM_001226
NM_032992

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
2820468Full LengthBC000305caspase 6, apoptosis-related cysteine peptidase
2820468Full LengthBC004460caspase 6, apoptosis-related cysteine peptidase

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_116787  NP_001217  

Protein Infomation

RefSeq
mRNAProteinSwissProtEnzymePfam
NM_001226 NP_001217 P55212 EC 3.4.22.59 Peptidase_C14
NM_032992 NP_116787     Peptidase_C14

Related Sequences

 
mRNAGenPeptSwissProtEnzyme
U20536 AAC50168 P55212 EC 3.4.22.59
U20537 AAC50169 P55212 EC 3.4.22.59
BC000305 AAH00305 P55212 EC 3.4.22.59
BC004460 AAH04460 P55212 EC 3.4.22.59
DQ894589 ABM85515    
EU176306 ABW03757    

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens CASP6 NP_001217 M.musculus Casp6 12368 Gene Info NP_033941 92
R.norvegicus Casp6 83584   NP_113963 90

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)

BioCarta Pathways
Pathway information courtesy of BioCarta