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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. STX5, syntaxin 5
Sequence ID:NM_001244666
NM_003164
RefSeqGene ID:NG_030034
Entrez Gene ID:6811
Ensembl ID:ENSG00000162236

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:11q12.3Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:11: 62574890 - 62599523


Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3605858Full LengthBC002645syntaxin 5
4560294Full LengthBC012137syntaxin 5

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_003155  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001244666 NP_001231595    
NM_003164 NP_003155 Q13190 Syntaxin
SNARE

Related Sequences

 
mRNAGenPeptSwissProt
U26648 AAC71078 Q13190
BC002645 AAH02645 Q13190
BC012137 AAH12137 Q13190
BT019646 AAV38452 Q13190
BT019647 AAV38453 Q13190
AK313497 BAG36279 Q13190
AK296675 BAG59272 B4DKR0
BX537426 CAD97668 Q13190

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens STX5 NP_003155 R.norvegicus Stx5 65134   NP_113892 96
M.musculus Stx5a 56389 Gene Info NP_001161271 94
D.melanogaster Syx5 34966   NP_523582 55
N.crassa NCU01907 3881684   XP_965538 46
C.elegans syn-3 179611   NP_505968 44
A.thaliana SYP32 822024   NP_189078 43
S.pombe sed5 2541263   NP_595576 42
S.cerevisiae SED5 850713   NP_013126 36

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)