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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. COL8A1, collagen, type VIII, alpha 1
Sequence ID:NM_001850
NM_020351
Entrez Gene ID:1295
Ensembl ID:ENSG00000144810

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:3q12.3Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:3: 99463811 - 99515124

 Exon Info From UCSC:
NM_001850
NM_020351

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3875911Full LengthBC013581collagen, type VIII, alpha 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_001841  NP_065084  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001850 NP_001841 P27658 C1q
Collagen
NM_020351 NP_065084 P27658 C1q
Collagen

Related Sequences

 
mRNAGenPeptSwissProt
AF170702 AAF89665 Q9NRT5
BC013581 AAH13581 P27658
BT009917 AAP88919 P27658
AY550974 AAT52220 A1KY36
DQ893873 ABM84799  
X57527 CAA40748 P27658

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens COL8A1 NP_065084 M.musculus Col8a1 12837 Gene Info NP_031765 94
R.norvegicus Col8a1 304021   NP_001100570 94

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)