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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. RPS27, ribosomal protein S27
Sequence ID:NM_001030
Entrez Gene ID:6232
Ensembl ID:ENSG00000177954

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssemblies

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:1q21Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:1: 153963237 - 153964569

NM_001030 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
140153963238153963277
41149153963590153963698
150260153964041153964151
261352153964540153964631

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3607957Full LengthBC002658ribosomal protein S27
6744779Full LengthBC070219ribosomal protein S27

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001030 NP_001021 P42677 Ribosomal_S27e

Related Sequences

 
mRNAGenPeptSwissProt
L19739 AAA59867 P42677
U57847 AAB02266 P42677
BC002658 AAH02658 P42677
BC070219 AAH70219 P42677
D28454 BAA05820  
AK312070 BAG35006 P42677

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens RPS27 NP_001021 M.musculus Rps27 57294 Gene Info NP_081291 100
M.musculus Gm9846 100043813   NP_001177187 100
R.norvegicus Rps27 94266   NP_446049 100
A.thaliana AT5G47930 834844   NP_199604 82
C.elegans rps-27 178538   NP_503134 80
A.thaliana RS27A 825283   NP_191670 79
A.thaliana AT2G45710 819179   NP_182095 77
P.falciparum PF13_0045 814024   XP_001349810 73

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)