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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. PAX5, Paired box 5
Sequence ID:NM_016734
Entrez Gene ID:5079
Ensembl ID:ENSG00000196092

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:9p13Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:9: 37002655 - 37020662

NM_016734 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
121033683853036840632
210421903684683936846925
219122923688200036882101
229324223692335136923480
242325983696654536966720
259927273700264437002772
272827923700646937006533
279329903701499337015190
299131563702063237020797
315736503703398237034475

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
100063578Full LengthBC156927paired box 5
100061597BC156189paired box 5

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_057953  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_016734 NP_057953 Q02548 PAX

Related Sequences

 
mRNAGenPeptSwissProt
M96944 AAA58397 Q02548
U62539 AAB09533 Q93057
AF080573 AAC35286 Q02548
BC156189 AAI56190  
BC156927 AAI56928  
AY463952 AAR27590 Q02548
AY463953 AAR27591 Q02548
AY463954 AAR27592 Q02548
AY463955 AAR27593 Q02548
AY463956 AAR27594 Q02548
AY463957 AAR27595 Q02548
FJ626406 ACM91589 C0KTE1
FJ626407 ACM91590 C0KTE2
FJ626408 ACM91591 C0KTE3
FJ626409 ACM91592 C0KTE4
FJ626410 ACM91593 C0KTE5
FJ626411 ACM91594 C0KTE6
FJ626412 ACM91595 C0KTE7
FJ626413 ACM91596 C0KTE8
FJ626414 ACM91597 C0KTE9
FJ626415 ACM91598 C0KTF0
FJ626416 ACM91599 C0KTF0
FJ626417 ACM91600 C0KTF2
FJ626419 ACM91602 C0KTF4
FJ626420 ACM91603 C0KTF5
FJ626421 ACM91604 C0KTF6
FJ626422 ACM91605 C0KTF7
FJ626423 ACM91606 C0KTF8
FJ626424 ACM91607 C0KTF9
FJ626425 ACM91608 C0KTG0

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens PAX5 NP_057953 M.musculus Pax5 18507 Gene Info NP_032808 99
R.norvegicus RGD1565236 500453   NP_001102731 99

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)