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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. HOXB5, homeobox B5
Sequence ID:NM_002147
Entrez Gene ID:3215
Ensembl ID:ENSG00000120075

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:17q21.3Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:17: 46669570 - 46671159

NM_002147 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
1112094666861946669817
121018304667048246671102

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
40125798Full LengthBC117247homeobox B5
2819487IncompleteBC004454homeobox B5
2819487IncompleteBC008940homeobox B5

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_002138  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_002147 NP_002138 P09067 Homeobox

Related Sequences

 
mRNAGenPeptSwissProt
M92299 AAA52682 P09067
M86726 AAB59430 P09067
BC117247 AAI17248 P09067
AK314964 BAG37466 P09067
X03794 CAA27420 P09067

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens HOXB5 NP_002138 M.musculus Hoxb5 15413 Gene Info NP_032294 99
R.norvegicus Hoxb5 497987   XP_573183 99
A.gambiae AgaP_AGAP004659 1272726   XP_311616 47
D.melanogaster Scr 40833   NP_524248 43

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)