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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. LMO1, LIM domain only 1 (rhombotin 1)
Sequence ID:NM_002315
NM_001270428
RefSeqGene ID:NG_032827
Entrez Gene ID:4004
Ensembl ID:ENSG00000166407

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:11p15Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:11: 8245860 - 8290182

Transcript StartTranscript EndChromosomal Start Chromosomal End
141282458568246267
41353882485218248646
53975282518378252050
753127482848848285405

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
7262577Full LengthBC069793LIM domain only 1 (rhombotin 1)
7262648Full LengthBC069673LIM domain only 1 (rhombotin 1)
7262660Full LengthBC069752LIM domain only 1 (rhombotin 1)
40000075Full LengthBC096056LIM domain only 1 (rhombotin 1)
40000076Full LengthBC096057LIM domain only 1 (rhombotin 1)
40000078Full LengthBC096058LIM domain only 1 (rhombotin 1)
5580838IncompleteBC039512LIM domain only 1 (rhombotin 1)

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_002306  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001270428 NP_001257357    
NM_002315 NP_002306 P25800 LIM

Related Sequences

 
mRNAGenPeptSwissProt
M26682 AAA36819 P25800
BC039512 AAH39512 Q8IXR0
BC069673 AAH69673 P25800
BC069752 AAH69752 P25800
BC069793 AAH69793 P25800
BC096056 AAH96056 P25800
BC096057 AAH96057 P25800
BC096058 AAH96058 Q4VBC4
HQ448387 ADQ32867  

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens LMO1 NP_002306 M.musculus Lmo1 109594 Gene Info NP_476514 99
R.norvegicus Lmo1 245979   NP_620812 99
D.melanogaster Bx 32846   NP_523402 79
A.gambiae AgaP_AGAP000731 1272320   XP_311266 77

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)