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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Hs. TUBA1A, tubulin, alpha 1a
Sequence ID:NM_001270399
NM_001270400
NM_006009
RefSeqGene ID:NG_008966
Entrez Gene ID:7846
Ensembl ID:ENSG00000167552

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:12q13.12Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:12: 49578582 - 49582841

Transcript StartTranscript EndChromosomal Start Chromosomal End
1512034957858449579772
120413524958009249580240
135315754958039349580615
157616774958275949582860

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3528520Full LengthBC006468tubulin, alpha 1a
6050536Full LengthBC050637tubulin, alpha 1a

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_006000  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001270399 NP_001257328    
NM_001270400 NP_001257329    
NM_006009 NP_006000 Q71U36 Tubulin
Tubulin_C

Related Sequences

 
mRNAGenPeptSwissProt
K00557 AAA91575 Q71U36
AF141347 AAD33871 Q71U36
AF141348 AAD33872 Q9UQM3
BC006468 AAH06468 Q71U36
BC050637 AAH50637 Q71U36
DQ890579 ABM92196  
EU176481 ABW03282  
AK289483 BAF82172 Q71U36
AK297775 BAG60120 B4DN58
AK298838 BAG60966 B4DQK4

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens TUBA1A NP_006000 R.norvegicus Tuba1a 64158   NP_071634 100
M.musculus Tuba1a 22142 Gene Info NP_035783 100
A.gambiae AgaP_AGAP010971 1270985   XP_309723 97
D.melanogaster alphaTub84B 40848   NP_476772 97
C.elegans mec-12 175419   NP_497663 93
S.cerevisiae TUB3 854915   NP_013582 74

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)

BioCarta Pathways
Pathway information courtesy of BioCarta