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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. SLC18A3, solute carrier family 18 (vesicular acetylcholine), member 3
Sequence ID:NM_003055
RefSeqGene ID:NG_011797
Entrez Gene ID:6572
Ensembl ID:ENSG00000187714

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:10q11.2Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:10: 50818457 - 50820385

NM_003055 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
124195081834650820764

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4136084Full LengthBC007765solute carrier family 18 (vesicular acetylcholine), member 3

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_003046  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_003055 NP_003046 Q16572 MFS_1

Related Sequences

 
mRNAGenPeptSwissProt
U09210 AAA20497 Q16572
BC007765 AAH07765 Q16572
JF432245 ADZ15462  
AK313094 BAG35918 Q16572

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens SLC18A3 NP_003046 R.norvegicus Slc18a3 60422   NP_113851 95
M.musculus Slc18a3 20508 Gene Info NP_068358 95
A.gambiae AgaP_AGAP002369 1273594   XP_312587 60
D.melanogaster VAChT 42795   NP_477138 56

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)