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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. ARF5, ADP-ribosylation factor 5
Sequence ID:NM_001662
Entrez Gene ID:381
Ensembl ID:ENSG00000004059

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, brain, cartilage, cerebellum, cerebrum, cervix, colon, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, spleen, stem cell, stomach, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:7q31.3Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:7: 127228552 - 127231353

NM_001662 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
1103127228516127228618
104184127229136127229216
185294127229538127229647
295366127230119127230190
367492127231016127231141
493978127231266127231751

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
2822973Full LengthBC003043ADP-ribosylation factor 5
4862014Full LengthBC033104ADP-ribosylation factor 5

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_001653  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001662 NP_001653 P84085 Arf

Related Sequences

 
mRNAGenPeptSwissProt
M57567 AAA90927 P84085
BC003043 AAH03043 P84085
BC033104 AAH33104 P84085
AF493884 AAM12598 P84085
BT007087 AAP35750 P84085
AK312107 BAG35043 A4D0Z3
AK297026 BAG59555 B4DLJ3

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens ARF5 NP_001653 M.musculus Arf5 11844 Gene Info NP_031506 100
R.norvegicus Arf5 79117   NP_077063 100
C.elegans arf-3 177595   NP_501336 85
A.gambiae AgaP_AGAP002931 1273032   XP_311973 84
D.melanogaster Arf102F 43823   NP_524631 84

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)