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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Hs. TAF9, TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 32kDa
Sequence ID:NM_001015891
NM_001015892
NM_003187
NM_016283
Entrez Gene ID:6880
Ensembl ID:ENSG00000085231

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, placenta, pooled tissue, prostate, retina, salivary gland, skin, stem cell, stomach, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:5q11.2-q13.1Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:5: 68647552 - 68665840

 Exon Info From UCSC:
NM_001015891
NM_001015892
NM_003187
NM_016283

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
2966411Full LengthBC007349TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 32kDa
2966411Full LengthBC007426TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 32kDa
3448836Full LengthBC003400TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 32kDa
4837792Full LengthBC033320TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 32kDa

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_003178  NP_057367  NP_001015892  

Protein Infomation

RefSeq
mRNAProteinSwissProtEnzymePfam
NM_001015891 NP_001015891      
NM_001015892 NP_001015892 Q16594   TFIID-31kDa
NM_003187 NP_003178 Q16594   TFIID-31kDa
NM_016283 NP_057367 Q9Y3D8 EC 2.7.4.3 AAA

Related Sequences

 
mRNAGenPeptSwissProtEnzyme
U30504 AAA84389 Q16594  
U25112 AAA91318 Q16594  
U21858 AAC50153 Q16594  
AF151895 AAD34132 Q9Y3D8 EC 2.7.4.3
AF110777 AAF14860 Q9Y3D8 EC 2.7.4.3
BC003400 AAH03400 Q16594  
BC007349 AAH07349 Q9Y3D8 EC 2.7.4.3
BC007426 AAH07426 Q9Y3D8 EC 2.7.4.3
BC033320 AAH33320 Q16594  
BT019652 AAV38458 Q16594  
EU832059 ACE86721    
EU831966 ACE87407    
AJ878880 CAI48030 Q9Y3D8 EC 2.7.4.3
AJ878881 CAI48031 Q9Y3D8 EC 2.7.4.3

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens TAF9 NP_001015892 M.musculus Taf9 108143 Gene Info NP_001015889 96
R.norvegicus Taf9 373541   NP_908937 96
D.melanogaster e(y)1 32762   NP_523391 58
A.gambiae AgaP_AGAP003094 1273770   XP_312783 48
S.pombe taf9 2543133   NP_592893 44
S.cerevisiae TAF9 855276   NP_013963 34

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)