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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. LGI4, Leucine-rich repeat LGI family, member 4
Sequence ID:NM_139284
Entrez Gene ID:163175
Ensembl ID:ENSG00000153902

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:19q13.12|19q13.11Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:19: 35616092 - 35625870

NM_139284 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
1910133561541635616410
101415193561717335617678
152016843561775635617920
168518543562228935622458
185519263562269235622763
192719983562287435622945
199920703562459635624667
207121423562493635625007
214329063562541435626177

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
9020684Full LengthBC136694leucine-rich repeat LGI family, member 4
9020687Full LengthBC136697leucine-rich repeat LGI family, member 4

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_644813  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_139284 NP_644813 Q8N135 LRR_1
EPTP

Related Sequences

 
mRNAGenPeptSwissProt
BC087848 AAH87848 Q8N135
BC136694 AAI36695 Q8N135
BC136697 AAI36698 Q8N135
BC140008 AAI40009 A5D6Y5
AF467954 AAM49552 Q8N135
AY358121 AAQ88488 Q8N135
AJ487519 CAD31787 Q8N135
AJ487959 CAD32306 Q8N135
AL832968 CAH56336 Q658V8

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens LGI4 NP_644813 M.musculus Lgi4 243914 Gene Info NP_653139 88
R.norvegicus Lgi4 361549   NP_955793 88

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)