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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Hs. TUBA1C, tubulin, alpha 1c
Sequence ID:NM_032704
Entrez Gene ID:84790
Ensembl ID:ENSG00000167553

Database Links

UniGeneEntrez GeneEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:12q13.12Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:12: 49658864 - 49667116

NM_032704 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
11034965886449658966
1043264966324749663469
3274754966361049663758
47615534966603549667112

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
2905506Full LengthBC019298tubulin, alpha 1c
3543481Full LengthBC021088tubulin, alpha 1c
3617714Full LengthBC004949tubulin, alpha 1c
3832363Full LengthBC051297tubulin, alpha 1c
3926854Full LengthBC033064tubulin, alpha 1c
4025017Full LengthBC011790tubulin, alpha 1c
4134187Full LengthBC005946tubulin, alpha 1c
4397636Full LengthBC063036tubulin, alpha 1c

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_116093  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_032704 NP_116093 Q9BQE3 Tubulin
Tubulin_C

Related Sequences

 
mRNAGenPeptSwissProt
BC004949 AAH04949 Q9BQE3
BC005946 AAH05946 Q9BQE3
BC011790 AAH11790 Q9BQE3
BC019298 AAH19298 Q9BQE3
BC021088 AAH21088 Q9BQE3
BC033064 AAH33064 Q8N532
BC051297 AAH51297 Q9BQE3
BC063036 AAH63036 Q9BQE3
DQ892986 ABM83912  
DQ896235 ABM87234  
D28390 BAA05756  
AK223024 BAD96744 Q53GA7
AK293589 BAH11541 B7Z1K5

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens TUBA1C NP_116093 M.musculus Tuba1c 22146 Gene Info NP_033474 99
R.norvegicus Tuba1c 300218   NP_001011995 99
D.melanogaster alphaTub85E 41183   NP_524297 95
A.thaliana TUA4 839405   NP_171974 86
A.thaliana TUA2 841425   NP_175423 86
A.thaliana TUA6 827154   NP_193232 86
C.elegans tba-9 185538   NP_508555 86
P.falciparum PFI0180w 813316   XP_001351911 84
P.falciparum PFD1050w 812459   XP_001351526 83
N.crassa NCU09468 3879371   XP_963223 78
S.pombe nda2 2539864   NP_596774 77
S.pombe atb2 2540936   NP_595106 76
S.cerevisiae TUB1 854889   NP_013625 75

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)