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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. SCN4B, sodium channel, voltage-gated, type IV, beta subunit
Sequence ID:NM_001142348
NM_001142349
NM_174934
NR_024527
RefSeqGene ID:NG_011710
Entrez Gene ID:6330
Ensembl ID:ENSG00000177098

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:11q23.3Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:11: 118004093 - 118006497

 Exon Info From UCSC:
NM_001142348
NM_001142349
NM_174934

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4817294Full LengthBC035017sodium channel, voltage-gated, type IV, beta

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_777594  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001142348 NP_001135820    
NM_001142349 NP_001135821    
NM_174934 NP_777594 Q8IWT1 V-set

Related Sequences

 
mRNAGenPeptSwissProt
BC035017 AAH35017 Q8IWT1
AY149967 AAN74584 Q8IWT1
AK314531 BAG37123 B0YJ93

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens SCN4B NP_777594 R.norvegicus Scn4b 315611   NP_001008880 80
M.musculus Scn4b 399548 Gene Info NP_001013408 79

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)