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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. RNF40, ring finger protein 40, E3 ubiquitin protein ligase
Sequence ID:NM_001207033
NM_001207034
NM_014771
Entrez Gene ID:9810
Ensembl ID:ENSG00000103549

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:16p11.2-p11.1Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:16: 30773660 - 30786536


Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
2967275Full LengthBC018647ring finger protein 40
3607432Full LengthBC011769ring finger protein 40
3628183Full LengthBC006133ring finger protein 40
3603934IncompleteBC004527ring finger protein 40
4404152IncompleteBC030802ring finger protein 40

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_055586  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001207033 NP_001193962    
NM_001207034 NP_001193963    
NM_014771 NP_055586 O75150 zf-C3HC4

Related Sequences

 
mRNAGenPeptSwissProt
AF122819 AAG13723 O75150
BC004527 AAH04527 O75150
BC006133 AAH06133 O75150
BC011769 AAH11769 O75150
BC018647 AAH18647 O75150
BC030802 AAH30802 O75150
DQ893443 ABM84369  
DQ896794 ABM87793  
AB014561 BAA31636 O75150
AK027406 BAB55092 O75150
AK131310 BAD18476 Q6ZN99
AK291666 BAF84355 A8K6K1
AK075526 BAG52163 B3KQV1
AK293710 BAG57143 B4DEN2
AK294258 BAG57553 B4DFU2
AK297531 BAG59933 B4DMM1
AK304521 BAG65325 B4E313
BX640763 CAE45869 O75150
CR627431 CAH10518 O75150

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens RNF40 NP_055586 M.musculus Rnf40 233900 Gene Info NP_758485 93
R.norvegicus Rnf40 266712   NP_703201 93
A.gambiae AgaP_AGAP007335 1269842   XP_308493 51
D.melanogaster Bre1 38652   NP_647989 49
A.thaliana HUB2 841968   NP_001185233 25

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)