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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Hs. DDX27, DEAD (Asp-Glu-Ala-Asp) box polypeptide 27
Sequence ID:NM_017895
Entrez Gene ID:55661
Ensembl ID:ENSG00000124228

Database Links

UniGeneEntrez GeneEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:20q13.13Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:20: 47842978 - 47860371

 Exon Info From UCSC:
NM_017895

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
8992003Full LengthBC126287DEAD (Asp-Glu-Ala-Asp) box polypeptide 27
9052645Full LengthBC144125DEAD (Asp-Glu-Ala-Asp) box polypeptide 27
40146306Full LengthBC130275DEAD (Asp-Glu-Ala-Asp) box polypeptide 27
4128730IncompleteBC009304DEAD (Asp-Glu-Ala-Asp) box polypeptide 27
4544412IncompleteBC011927DEAD (Asp-Glu-Ala-Asp) box polypeptide 27
4903119IncompleteBC016060DEAD (Asp-Glu-Ala-Asp) box polypeptide 27
6387875IncompleteBC104480DEAD (Asp-Glu-Ala-Asp) box polypeptide 27

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_060365  

Protein Infomation

RefSeq
mRNAProteinSwissProtEnzymePfam
NM_017895 NP_060365 Q96GQ7 EC 3.6.4.13 DEAD
Helicase_C

Related Sequences

 
mRNAGenPeptSwissProtEnzyme
AF193054 AAG22482 Q96GQ7 EC 3.6.4.13
BC009304 AAH09304 Q96GQ7 EC 3.6.4.13
BC011927 AAH11927 Q96GQ7 EC 3.6.4.13
BC016060 AAH16060 Q96GQ7 EC 3.6.4.13
BC104480 AAI04481 Q3MI07  
BC126287 AAI26288 Q96GQ7 EC 3.6.4.13
BC130275 AAI30276 Q96GQ7 EC 3.6.4.13
BC144125 AAI44126 Q96GQ7 EC 3.6.4.13
AF336851 AAK21271 Q96GQ7 EC 3.6.4.13
AY044431 AAK95821 Q96GQ7 EC 3.6.4.13
EU718675 ACD91989 B3GQE6  
HQ258508 ADR83262    
HQ258546 ADR83300    
AK000603 BAA91284 Q96GQ7 EC 3.6.4.13
AK022979 BAB14343 Q96GQ7 EC 3.6.4.13
AK223116 BAD96836 Q53G15  
AK300135 BAH13221 B7Z6D5  

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens DDX27 NP_060365 R.norvegicus Ddx27 362274   NP_001129273 93
M.musculus Ddx27 228889 Gene Info NP_694705 93
A.gambiae AgaP_AGAP011084 1270844   XP_309566 54
D.melanogaster Rs1 44087   NP_651970 51
C.elegans Y71G12B.8 171743   NP_490891 51
N.crassa NCU11175 5847888   XP_001728501 45
A.thaliana AT4G16630 827364   NP_193396 44
S.pombe ddx27 2543155   NP_593214 42
S.cerevisiae DRS1 850652   NP_013093 39

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)