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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. CNN2, Calponin 2
Sequence ID:NM_004368
NM_201277
Entrez Gene ID:1265
Ensembl ID:ENSG00000064666

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer Aberrations

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, pituitary gland, placenta, pooled tissue, prostate, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:19p13.3Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:19: 1026627 - 1039062

 Exon Info From UCSC:
NM_004368
NM_201277

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
8860204Full LengthBC148264calponin 2
40148129Full LengthBC141818calponin 2
40148834Full LengthBC141833calponin 2

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_004359  NP_958434  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_004368 NP_004359 Q99439 CH
Calponin
NM_201277 NP_958434   CH
Calponin

Related Sequences

 
mRNAGenPeptSwissProt
BC141818 AAI41819 Q99439
BC141833 AAI41834 Q99439
BC148264 AAI48265 Q6FHE4
D83735 BAA12090 Q99439
D86059 BAA20887 Q99439
AK222924 BAD96644 Q53GK7
AK126391 BAG54322 Q99439
AK293171 BAG56715 B4DDF4
AK295271 BAG58257 B4DHU5
AK297774 BAG60119 B4DN57
AK300788 BAG62450 B4DUT8
CR541810 CAG46609 Q6FHE4
CR541831 CAG46630 Q6FHC3

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens CNN2 NP_004359 M.musculus Cnn2 12798 Gene Info NP_031751 96

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)