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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. RAB5C, RAB5C, member RAS oncogene family
Sequence ID:NM_001252039
NM_004583
NM_201434
Entrez Gene ID:5878
Ensembl ID:ENSG00000108774

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, brain, cartilage, cerebellum, cerebrum, cervix, colon, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, retina, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:17q21.2Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:17: 40277791 - 40282589

 Exon Info From UCSC:
NM_004583
NM_201434

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4938169Full LengthBC106039RAB5C, member RAS oncogene family
40083572Full LengthBC114439RAB5C, member RAS oncogene family

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_958842  NP_004574  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001252039 NP_001238968    
NM_004583 NP_004574 P51148 Ras
NM_201434 NP_958842 P51148 Ras

Related Sequences

 
mRNAGenPeptSwissProt
U11293 AAA74081 P51148
U18420 AAB08927 P51148
AF141304 AAF66594 P51148
BC106039 AAI06040 P51148
BC114439 AAI14440 P51148
AF498938 AAM21086 P51148
BT019484 AAV38291 P51148
EU832196 ACE86766  
EU832102 ACE87452  
CR541901 CAG46699 P51148

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens RAB5C NP_004574 M.musculus Rab5c 19345 Gene Info NP_077776 99
A.gambiae AgaP_AGAP007901 1278055   XP_317585 86
D.melanogaster Rab5 33418   NP_523457 76

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)