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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. HLA-E, major histocompatibility complex, class I, E
Sequence ID:NM_005516
Entrez Gene ID:3133
Ensembl ID:ENSG00000204592

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer Aberrations

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:6p21.3Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:6: 30457315 - 30461976

NM_005516 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
11903045718230457371
1914603045750230457771
4617363045801630458291
73710123045891330459188
101311293045931330459429
113011623046018030460212
116312053046031730460359
120626613046052530461980

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3140835Full LengthBC002578major histocompatibility complex, class I, E
4696327Full LengthBC040479major histocompatibility complex, class I, E
3622619IncompleteBC004297major histocompatibility complex, class I, E

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_005516 NP_005507    

Related Sequences

 
mRNAGenPeptSwissProt
M20022 AAA52655 P13747
M31183 AAA57146 Q29939
BC002578 AAH02578 Q6DU50
P13747
BC004297 AAH04297 Q6DU50
P13747
BC040479 AAH40479 Q6DU44
AY221103 AAO34408 P13747
Q6DU44
AY216681 AAO37688 P13747
Q6DU44
DQ891891 ABM82817  
DQ895077 ABM86003  
AB209870 BAD93107 Q59EE1
AK292391 BAF85080 A8K8M6
AK296822 BAG59393 B4DL31
AK298695 BAG60853 B4DQ91
AK300906 BAG62542 B4DV30
AK301125 BAG62719 B4DVK7
AK316327 BAH14698 B4DV30
X56841 CAA40172 O19682
X64879 CAA46098 O19683
AJ293263 CAC07212 P13747
Q6DU44
AJ293264 CAC07213 Q6DU50
P13747
BX538084 CAD98008 Q7Z367

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens HLA-E NP_005507 M.musculus H2-T23 15040 Gene Info NP_034528 68
M.musculus C920025E04Rik 667803   XP_997668 66
R.norvegicus RT1-S3 294228   NP_001008886 64

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)