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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. ATF1, activating transcription factor 1
Sequence ID:NM_005171
RefSeqGene ID:NG_027673
Entrez Gene ID:466
Ensembl ID:ENSG00000123268

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:12q13Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:12: 51157883 - 51213562

NM_005171 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
12725115781851158089
2733715117392251174020
3724725118969151189791
4736065120323851203371
6077895120779251207974
7909495120806251208221
95024385121341751214905

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4102231Full LengthBC029619activating transcription factor 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_005162  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_005171 NP_005162 P18846 bZIP_1
pKID

Related Sequences

 
mRNAGenPeptSwissProt
BC029619 AAH29619 P18846
EU446464 ABZ91993  
EU446626 ABZ92155  
AK313406 BAG36201 B2R8K4
AK299240 BAG61271 B4DRF9

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens ATF1 NP_005162 R.norvegicus Atf1 315305   NP_001094365 93
M.musculus Atf1 11908 Gene Info NP_031523 92
M.musculus Gm1862 100040260 Gene Info XP_001474867 90

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)

BioCarta Pathways
Pathway information courtesy of BioCarta