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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. SCARF1, scavenger receptor class F, member 1
Sequence ID:NM_003693
NM_145350
NM_145352
NR_028075
NR_028076
Entrez Gene ID:8578
Ensembl ID:ENSG00000074660

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:17p13.3Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:17: 1537158 - 1549017

 Exon Info From UCSC:
NM_003693
NM_145350
NM_145352

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
6041360Full LengthBC039735scavenger receptor class F, member 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_663325  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_003693 NP_003684 Q14162  
NM_145350 NP_663325   EGF
Laminin_EGF
DSL
EGF_2
NM_145352 NP_663327    

Related Sequences

 
mRNAGenPeptSwissProt
BC039735 AAH39735 Q14162
D63483 BAA09770 Q14162
D86864 BAA24070 Q14162
AB052947 BAC02693 Q14162
AB052948 BAC02694 Q14162
AB052949 BAC02695 Q14162
AB052950 BAC02696 Q14162
AK291810 BAF84499 A8K6Z5
AK298737 BAG60884 B4DQC2

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens SCARF1 NP_003684 M.musculus Scarf1 380713 Gene Info NP_001004157 73
R.norvegicus Scarf1 303313   NP_001100492 72

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)