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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Hs. GABARAP, GABA(A) receptor-associated protein
Sequence ID:NM_007278
Entrez Gene ID:11337
Ensembl ID:ENSG00000170296

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:17p13.1Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:17: 7143737 - 7145752

NM_007278 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
3453271437397144237
53365171446607144778
65273071449197144997
73192471455597145752

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
40022383Full LengthBC106748GABA(A) receptor-associated protein
40022384Full LengthBC106749GABA(A) receptor-associated protein

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_009209  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_007278 NP_009209 O95166
Q6IAW1
MAP1_LC3

Related Sequences

 
mRNAGenPeptSwissProt
AF044671 AAD02337 O95166
Q6IAW1
AF067171 AAD32455 O95166
Q6IAW1
AF161586 AAD47641 O95166
Q6IAW1
AF183425 AAG09694 O95166
Q6IAW1
BC106748 AAI06749 O95166
Q6IAW1
BC106749 AAI06750 O95166
Q6IAW1
JN663880 AEZ06293 H6UMI1
AB030711 BAB21549 O95166
Q6IAW1
AK312205 BAG35138 B2R5J1
CR457043 CAG33324 O95166
Q6IAW1
CR542235 CAG47031 O95166
Q6IAW1

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens GABARAP NP_009209 M.musculus Gabarap 56486 Gene Info NP_062723 100
R.norvegicus Gabarap 58974   NP_742033 100
A.gambiae AgaP_AGAP002685 1273277   XP_312238 91
D.melanogaster Atg8a 32001   NP_727447 91
C.elegans lgg-1 174050   NP_495277 84
N.crassa NCU01545 3872408   XP_956248 59
A.thaliana ATG8D 815112   NP_178631 58
S.pombe atg8 2541386   NP_596531 56
S.cerevisiae ATG8 852200   NP_009475 55

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)

BioCarta Pathways
Pathway information courtesy of BioCarta