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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. SOX9, SRY (sex determining region Y)-box 9
Sequence ID:NM_000346
RefSeqGene ID:NG_012490
Entrez Gene ID:6662
Ensembl ID:ENSG00000125398

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Associated Diseases (from OMIM)

DiseaseOther Genes
ACAMPOMELIC CAMPOMELIC DYSPLASIA 

Cytogenetic Location (from UniGene)

Cytogenetic Location:17q23Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:17: 70117163 - 70120727

NM_000346 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
18037011716070117962
80410577011885970119112
105839267011968370122551

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4299305Full LengthBC007951SRY (sex determining region Y)-box 9
6200521Full LengthBC056420SRY (sex determining region Y)-box 9
4149363IncompleteBC018276SRY (sex determining region Y)-box 9 (campomelic dysplasia, autosomal sex-reversal)

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_000337  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_000346 NP_000337 P48436 HMG_box

Related Sequences

 
mRNAGenPeptSwissProt
BC007951 AAH07951 P48436
BC056420 AAH56420 P48436
BT006875 AAP35521 P48436
AK295455 BAG58389 B4DI77
Z46629 CAA86598 P48436

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens SOX9 NP_000337 M.musculus Sox9 20682 Gene Info NP_035578 97
D.melanogaster Sox100B 45039   NP_651839 39

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)