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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Hs. SMARCD3, SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3
Sequence ID:NM_001003801
NM_001003802
NM_003078
RefSeqGene ID:NG_029468
Entrez Gene ID:6604
Ensembl ID:ENSG00000082014

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer Aberrations

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:7q35-q36Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:7: 150936061 - 150973019

 Exon Info From UCSC:
NM_001003801
NM_001003802
NM_003078

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3608512Full LengthBC002628SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3
5212363Full LengthBC110350SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_003069  NP_001003801  NP_001003802  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001003801 NP_001003801 Q6STE5 SWIB
NM_001003802 NP_001003802   SWIB
NM_003078 NP_003069   SWIB

Related Sequences

 
mRNAGenPeptSwissProt
U66619 AAC50697 Q6STE5
BC002628 AAH02628 Q6STE5
BC110350 AAI10351 Q6STE5
AY450430 AAR88510 Q6STE5
AY450431 AAR88511 Q6STE5
AK127595 BAG54531 B3KXL9
AK297876 BAH12684 B7Z4U8
AK316173 BAH14544 B7ZA58

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens SMARCD3 NP_001003801 M.musculus Smarcd3 66993 Gene Info NP_080167 100
R.norvegicus Smarcd3 296732   NP_001011966 100
A.gambiae AgaP_AGAP005336 1276044   XP_315349 67
D.melanogaster Bap60 32268   NP_511143 66
C.elegans tag-246 176426   NP_499250 56
C.elegans C18E3.2 172018   NP_491329 51
S.pombe ssr3 2541438   NP_593110 37

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)