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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. STX1A, syntaxin 1A (brain)
Sequence ID:NM_001165903
NM_004603
RefSeqGene ID:NG_013360
Entrez Gene ID:6804
Ensembl ID:ENSG00000106089

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:7q11.23Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:7: 73114736 - 73133965

 Exon Info From UCSC:
NM_001165903
NM_004603

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
2820851Full LengthBC003011syntaxin 1A (brain)
5769528Full LengthBC064644syntaxin 1A (brain)
2820851IncompleteBC000444syntaxin 1A (brain)

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_004594  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001165903 NP_001159375    
NM_004603 NP_004594 Q75ME0
Q16623
Syntaxin
SNARE

Related Sequences

 
mRNAGenPeptSwissProt
U12918 AAA20940 Q16623
L37792 AAA53519 Q75ME0
Q16623
BC003011 AAH03011 Q16623
BC064644 AAH64644 Q75ME0
Q16623
GQ129291 ACT64425  
GQ129292 ACT64426  
D37932 BAA07151 Q75ME0
Q16623
AB086954 BAC78519 Q7Z5K3
AK313980 BAG36694 Q75ME0
AK299959 BAG61785 B4DSX3
CR457018 CAG33299 Q75ME0
Q16623

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens STX1A NP_004594 M.musculus Stx1a 20907 Gene Info NP_058081 99
R.norvegicus Stx1a 116470   NP_446240 99
R.norvegicus LOC100360064 100360064   XP_002728031 99
D.melanogaster Syx1A 42854   NP_001189276 71
A.gambiae AgaP_AGAP007698 1269535   XP_001687859 69
C.elegans unc-64 176743   NP_001022615 66
S.cerevisiae SSO2 855221   NP_013908 32
S.cerevisiae SSO1 855844   NP_015092 30
S.pombe psy1 2539377   NP_588053 30
A.thaliana SYP131 821141   NP_187030 26
A.thaliana SYP132 830702   NP_568187 26

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)

BioCarta Pathways
Pathway information courtesy of BioCarta