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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. MSH5, mutS homolog 5 (E. coli)
Sequence ID:NM_002441
NM_025259
NM_172165
NM_172166
RefSeqGene ID:NG_011611
Entrez Gene ID:4439
Ensembl ID:ENSG00000204410

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:6p21.3Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:6: 31707793 - 31730406

 Exon Info From UCSC:
NM_002441
NM_025259
NM_172165
NM_172166

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3050865Full LengthBC001358mutS homolog 5 (E. coli)
3050903Full LengthBC002498mutS homolog 5 (E. coli)
4591368Full LengthBC041031mutS homolog 5 (E. coli)

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_002432  NP_079535  NP_751897  NP_751898  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_002441 NP_002432 O43196 MutS_V
MutS_IV
MutS_III
NM_025259 NP_079535   MutS_V
MutS_IV
MutS_III
NM_172165 NP_751897   MutS_V
MutS_IV
MutS_III
NM_172166 NP_751898 O43196 MutS_V
MutS_IV
MutS_III

Related Sequences

 
mRNAGenPeptSwissProt
AF034759 AAB87632 O43196
AF048986 AAC62533 O43196
AF070071 AAC70066 O43196
BC001358 AAH01358 O43196
BC002498 AAH02498 O43196
BC041031 AAH41031 O43196
BT007200 AAP35864 O43196
AB209886 BAD93123 Q59EC5
AK097233 BAG53438 A2ABF0
AK303129 BAG64235 B4DZX3
AK304221 BAG65093 B4E2D1
AJ245661 CAB52406 Q9UMP2
AL122094 CAB59262 Q9UFG2

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens MSH5 NP_751897 M.musculus Msh5 17687 Gene Info NP_001139687 90
R.norvegicus Msh5 294252   NP_997701 88
N.crassa NCU09384 3879979   XP_963830 35
A.gambiae AgaP_AGAP002642 1273320   XP_312286 34
A.thaliana MSH5 821593   NP_188683 34
S.cerevisiae MSH5 851401   NP_010127 33
C.elegans msh-5 178268   NP_502531 31

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)