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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Hs. KRR1, KRR1, small subunit (SSU) processome component, homolog (yeast)
Sequence ID:NM_007043
Entrez Gene ID:11103
Ensembl ID:ENSG00000111615

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pineal gland, pituitary gland, placenta, pooled tissue, prostate, salivary gland, skin, soft tissue, stem cell, stomach, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:12q21.2Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:12: 75899943 - 75905381

NM_007043 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
323137589142075893730
231424077589550275895595
240824857589570275895779
248626567589768375897853
265727137589897775899033
271427977590009575900178
279829237590026375900388
292430587590056175900695
305932317590205375902225
323233577590529275905417

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4106298Full LengthBC016778KRR1, small subunit (SSU) processome component, homolog (yeast)
4827704Full LengthBC026107KRR1, small subunit (SSU) processome component, homolog (yeast)
5268517Full LengthBC033887KRR1, small subunit (SSU) processome component, homolog (yeast)
3685682IncompleteBC005225KRR1, small subunit (SSU) processome component, homolog (yeast)
4329064IncompleteBC014034HIV-1 Rev binding protein 2

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_008974  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_007043 NP_008974 Q13601 KH_1

Related Sequences

 
mRNAGenPeptSwissProt
U55766 AAB00557 Q13601
BC005225 AAH05225 Q13601
BC016778 AAH16778 Q13601
BC026107 AAH26107 Q13601
BC033887 AAH33887 Q13601
EF010919 ABJ97679 Q13601
DQ893552 ABM84478  
DQ893553 ABM84479  
DQ893554 ABM84480  
DQ896515 ABM87514  
AK313687 BAG36436 Q13601
AK297602 BAG59987 B4DMS5

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens KRR1 NP_008974 M.musculus Krr1 52705 Gene Info NP_848725 93
R.norvegicus Hrb2 314830   NP_001101564 92
S.cerevisiae KRR1 850298   NP_009872 65
D.melanogaster dbe 33269   NP_477240 63
S.pombe mis3 2540544   NP_596073 63
A.gambiae AgaP_AGAP007912 1278046   XP_317574 62
N.crassa NCU07041 3878319   XP_962180 58
A.thaliana AT5G08420 830741   NP_196459 56
C.elegans C05C8.2 179115   NP_504837 52
P.falciparum PFB0370c 812674   XP_001349592 51

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)