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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. CNOT7, CCR4-NOT transcription complex, subunit 7
Sequence ID:NM_013354
NM_054026
Entrez Gene ID:29883
Ensembl ID:ENSG00000198791

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssemblies

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, pineal gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:8p22-p21.3Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:8: 17088054 - 17104352

 Exon Info From UCSC:
NM_013354
NM_054026

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
2989585Full LengthBC007315CCR4-NOT transcription complex, subunit 7
4738218Full LengthBC070187CCR4-NOT transcription complex, subunit 7
5273703Full LengthBC060852CCR4-NOT transcription complex, subunit 7

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_473367  NP_037486  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_013354 NP_037486   CAF1
NM_054026 NP_473367   CAF1

Related Sequences

 
mRNAGenPeptSwissProt
L46722 AAF01500 Q9UIV1
BC007315 AAH07315 Q96IQ6
BC060852 AAH60852 Q9UIV1
BC070187 AAH70187 Q9UIV1
BT006685 AAP35331 Q96IQ6
AF086915 AAP97145 Q9UIV1
AK001209 BAG50869 B3KM57
AK021808 BAG51053 Q9UIV1
AK023466 BAG51197 B3KN35

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens CNOT7 NP_037486 M.musculus Cnot7 18983 Gene Info NP_035265 100
R.norvegicus Cnot7 306492   NP_001100783 100
A.gambiae AgaP_AGAP011413 1278281   XP_317896 78
D.melanogaster Pop2 39366   NP_729776 75
S.pombe caf1 2539041   NP_588385 57
N.crassa NCU09001 3875151   XP_959029 54
C.elegans ccf-1 176625   NP_499553 49

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)