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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Hs. RPL4, ribosomal protein L4
Sequence ID:NM_000968
Entrez Gene ID:6124
Ensembl ID:ENSG00000174444

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cerebellum, cerebrum, cervix, colon, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:15q22Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:15: 66791666 - 66797170

NM_000968 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
193556679165366791989
3564766679239366792513
4775606679263066792713
5617176679328666793442
7188476679371266793841
8489726679412566794249
97311116679494966795087
111212186679539566795501
121913906679569566795866
139114496679712566797183

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3051487Full LengthBC001365ribosomal protein L4
3353592Full LengthBC010151ribosomal protein L4
3546003Full LengthBC007996ribosomal protein L4
3688641Full LengthBC005817ribosomal protein L4
4025800Full LengthBC009888ribosomal protein L4
4098568Full LengthBC007748ribosomal protein L4
4636179Full LengthBC014653ribosomal protein L4
5259747Full LengthBC066925ribosomal protein L4
30711782Full LengthBC095427ribosomal protein L4
3897039IncompleteBC040610ribosomal protein L4

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_000959  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_000968 NP_000959 P36578 Ribosomal_L4

Related Sequences

 
mRNAGenPeptSwissProt
L20868 AAA60281 P36578
BC001365 AAH01365 P36578
BC005817 AAH05817 P36578
BC007748 AAH07748 P36578
BC007996 AAH07996 P36578
BC009888 AAH09888 P36578
BC010151 AAH10151 P36578
BC014653 AAH14653 P36578
BC066925 AAH66925 P36578
BC095427 AAH95427 P36578
DQ892189 ABM83115  
DQ895383 ABM86309  
D23660 BAA04887 P36578
AB208977 BAD92214 Q59GY2
AK223057 BAD96777 Q53G74
AK291117 BAF83806 P36578
AK291859 BAF84548 P36578
AK294113 BAG57447 B4DFI6
AK297484 BAG59904 B4DMJ2

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens RPL4 NP_000959 M.musculus Rpl4 67891 Gene Info NP_077174 95
R.norvegicus Rpl4 64302   NP_071955 94
D.melanogaster RpL4 43349   NP_524538 66
A.gambiae AgaP_AGAP002306 1273663   XP_312665 61
C.elegans rpl-4 172074   NP_491416 59
A.thaliana AT3G09630 820120   NP_187574 58
A.thaliana AT5G02870 831756   NP_195907 57
P.falciparum PFE0350c 812881   XP_001351629 51

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)