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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Hs. PELO, pelota homolog (Drosophila)
Sequence ID:NM_015946
Entrez Gene ID:53918
Ensembl ID:ENSG00000152684

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, brain, cartilage, cerebellum, cerebrum, cervix, colon, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, placenta, pooled tissue, prostate, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:5q11.2Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:5: 52095968 - 52097855

NM_015946 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
14755208377352084247
47617115209571852096953
171229185209724252098448

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
2967002Full LengthBC007249pelota homolog (Drosophila)
2967612Full LengthBC005889pelota homolog (Drosophila)
3160699Full LengthBC022789pelota homolog (Drosophila)
3608639Full LengthBC007650pelota homolog (Drosophila)

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_057030  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_015946 NP_057030 Q9BRX2 eRF1_1
eRF1_2
eRF1_3
NM_181501 NP_852478 P56199  

Related Sequences

 
mRNAGenPeptSwissProt
AF132951 AAD27726 Q9BRX2
AF118075 AAF22019 Q9UHT8
AF139828 AAG22574 Q9BRX2
BC005889 AAH05889 Q9BRX2
BC007249 AAH07249 Q9BRX2
BC007650 AAH07650 Q9BRX2
BC022789 AAH22789 Q9BRX2
BC137121 AAI37122 P56199
BC137122 AAI37123 P56199
AY117399 AAM89414 Q9BRX2
DQ892950 ABM83876  
DQ896198 ABM87197  
AK056144 BAG51633 B3KPC1
AK300423 BAG62150 B4DTY8

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens PELO NP_057030 M.musculus Pelo 105083 Gene Info NP_598819 97
R.norvegicus Pelo 294754   NP_001007635 97
A.gambiae AgaP_AGAP008269 1277715   XP_317201 68
D.melanogaster pelo 34286   NP_476982 66
C.elegans R74.6 187888   NP_497842 58
A.thaliana PEL1 828876   NP_194495 52
A.thaliana AT3G58390 825008   NP_191398 49
S.pombe SPCC18B5.06 2539371   NP_587936 49
N.crassa NCU09161 3875218   XP_959071 42

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)